Selected publications



A Single-Cell Transcriptome Atlas of the Human Pancreas

MJ Muraro et. al. Cell systems 3 (4), 385-394. e3, 2016

Cell Type Purification by Single-Cell Transcriptome-Trained Sorting

CS Baron et. al. Cell 179 (3), 527-452. e19, 2019

Identification of Enteroendocrine Regulators by Real-Time Single-Cell Differentiation Mapping

H Gehart et. al. Cell 176, 1–16, 2019

A transcriptomic roadmap to α- and β-cell differentiation in the embryonic pancreas.

L van Gurp et. al. Development 146, 2019

Enteroendocrine cells switch hormone expression along the crypt-to-villus BMP signalling gradient.

J Beumer et. al. Nature Cell Biology 20, 909–916, 2019

Whole-organism clone tracing using single-cell sequencing

A Alemany et. al. Nature 556, 108-112, 2018

Identity and dynamics of mammary stem cells during branching morphogenesis

CLGJ Scheele et. al. Nature 542 (7641), 313, 2017

Single-cell analysis reveals that stochasticity and paracrine signaling control interferon-alpha production by plasmacytoid dendritic cells

F Wimmers Nature Communications 9, 3317, 2018

In utero implantation of synthetic blastocysts generated from stem cells

Rivron NC et. al. Nature, in press, 2018

De novo prediction of stem cell identity using single-cell transcriptome data

D Grün et. al. Cell Stem Cell 19 (2), 266-277, 2016

A single-cell RNA sequencing study reveals cellular and molecular dynamics of the hippocampal neurogenic niche

B Artegiani et. al. Cell reports 21 (11), 3271-3284, 2017

Sharq, a versatile preprocessing and QC pipeline for Single Cell RNA-seq

T Candelli et. al. bioRxiv, 250811, 2018

Circadian networks in human embryonic stem cell‐derived cardiomyocytes

P Dierickx et. al. EMBO reports 18 (7), 1199-1212, 2017

Troy+ brain stem cells cycle through quiescence and regulate their number by sensing niche occupancy

O Basak et. al. PNAS, 201715911, 2018

Mapping the physical network of cellular interactions

JC Boisset et. al. Nature Methods 15, 547–553, 2018

Fate Before Function: Specification of the Hair Follicle Niche Occurs Prior to its Formation and Is Progenitor Dependents

KW Mok et. al. Available at SSRN 3253572, 2018

Single-cell Transcriptomics of the Pancreas: Experimental and Analytical Tools to Study Organ Development and Composition

M Muraro Utrecht University2018

The Majority of CD45– Ter119– CD31– Bone Marrow Cell Fraction Is of Hematopoietic Origin and Contains Erythroid and Lymphoid Progenitors

Philip E. Boulais et. al. Immunity 49-42018

Combined quantification of intracellular (phospho-) proteins and transcriptomics from fixed single cells

JP Gerlach et. al. bioRxiv, 3563292018