Lovindy, welcome to the team!
We are happy to announce that Lovindy Lebalado has joined SCD as our new laboratory technician, where she will assist in the sample processing pipeline and general laboratory maintenance. Lovindy is originally from Tangerang, a city next to Jakarta, the capital of Indonesia. After she gained her bachelor’s degree in Nutrition Science, she became acquainted…
How to get started with single-cell data analysis
Once you receive your single-cell sequencing data, you can get started with your single-cell data analysis. It can be overwhelming when you first download the data. Here, we’ll give you some tips for the first steps of single-cell sequencing data analysis. Choose your method The first and most important point is that there is not…
Dylan, welcome to the team!
We are happy to announce that Dylan Mooijman has joined SCD as our new Head of R&D, where he will be running our growing R&D department. Dylan is originally from a small coastal village in the western part of Holland but obtained his PhD after working in London, Boston, and finally Utrecht, the Netherlands. After…
How to analyze your Visium data
Recently we have added the 10x Genomics Visium Spatial Gene Expression solution to our portfolio. The Visium workflow generates two types of data: an H&E or Immunofluorescence (IF) tissue image and sequencing data in FASTQ files. But what are the options once you receive your data? Here, we provide you with an overview of tools…
PERSIST-SEQ: a new consortium to build a single-cell cancer atlas
PRESS RELEASE Single Cell Discoveries joins a new international consortium of academic and industrial leaders in the field of cancer research: PERSIST-seq. This collaborative research program aims to provide the cancer research community with a new gold standard workflow for single-cell sequencing by developing and validating best practices as well as generating and analysing…
What is Visium?
Visium Spatial Gene Expression is a spatial transcriptomics solution by 10x Genomics. In a previous blog post, we explain more about spatial transcriptomics in general, which you can read here. Here, we’ll provide you with a quick overview of the Visium Spatial Gene Expression solution, which we recently started offering as a service. A spatial transcriptomics solution Since Visium Spatial Gene Expression is a…
Chalene, welcome to the team!
We are happy to announce that as of July 5th, Chalene joined Single Cell Discoveries as our new Office Manager. Her main focus will be financial administration and HR activities. Chalene has come all the way from South Africa where she obtained her qualification in Marketing and Business Management. She has a strong background in…
What is spatial transcriptomics?
Spatial transcriptomics is an overarching term for all methods that assign transcriptomics data to the original location within the tissue. Here, we explain why to consider spatial transcriptomics and from which spatial techniques you can choose. A brief history of spatial transcriptomics Although the term spatial transcriptomics was first introduced in 2016, the first steps…
Update: Visium for FFPE
Recently, 10x Genomics has launched their Visium for FFPE kit. At Single Cell Discoveries, we have decided to include this in our Visium Pilot Program. What is Visium? Visium Spatial Gene Expression allows you to analyze the whole transcriptome of your tissue section. Previously, this was only available for fresh frozen tissue sections. Now, it…
Launching our Visium Pilot Program
We are happy to announce that we now offer 10x Genomics Visium Spatial Gene Expression as a service.
Becoming a 10x Genomics Certified Service Provider
We are proud to announce that as of March 29, 2021, we are a 10x Genomics Certified Service Provider. We have been certified for the Single Cell Gene Expression and Single Cell Immune Profiling solutions. What does it mean? The certification that we received from 10x Genomics means that we perform both methods according to the standards set by 10x Genomics. Therefore,…
Revealing an unexpected homogeneity in neuroblastoma
Tumors are usually very heterogeneous and consist of various cancer cell subtypes. Single-cell sequencing can be applied to understand this heterogeneity and often leads to identifying cancer cell subtypes. In this study, there is a surprising outcome: a homogeneous phenotype. In this scientific collaboration between many institutes in the Netherlands and the UK, researchers were…
